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xylA [2019-08-01 13:53:35]
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xylA [2019-08-01 13:53:35]

xylose isomerase
locus
BSU_17600
pI
5.64
mw
50.09 kDa
protein length
445 aa Sequence Blast
gene length
1338 bp Sequence Blast
function
utilization of xylan and xylose
product
xylose isomerase
essential
no
ec
5.3.1.5
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.5|Utilization of xylan/ xylose]

    • Gene

    Coordinates
    1,891,908 1,893,245

    The protein

    Catalyzed reaction/ biological activity

  • D-xylose = D-xylulose (according to Swiss-Prot)

    • Protein family

  • xylose isomerase family (according to Swiss-Prot)

    • Structure

  • [PDB|1A0D] (Geobacillus stearothermophilus)

    • [SW|Localization]

  • cytoplasm (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|24829427B4518FE67038F194B54D4AAFAC64EF19|xylA]-[gene|F417A5B46CC7FC69DC8606A46D1AD5E41FA35B13|xylB]
    description
    [Pubmed|1921970]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|2454911], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA]: repression, [Pubmed|8132469], in [regulon|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA regulon]
  • [protein|AF4395D134485290F4AA307B48494FED39E52CD7|XylR]: repression, [Pubmed|2454911], in [regulon|AF4395D134485290F4AA307B48494FED39E52CD7|XylR regulon]

    • regulation

  • carbon catabolite repression ([protein|search|CcpA]) [Pubmed|8132469]
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    Biological materials

    Mutant

  • GP1151 (del aphA3) available in [SW|Jörg Stülke]'s lab
  • 1A719 (no resistance), [Pubmed|1719948], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A719&Search=1A719 BGSC]
  • BKE17600 ([gene|24829427B4518FE67038F194B54D4AAFAC64EF19|xylA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE17600 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTGATTTCCCCCTTAAA, downstream forward: _UP4_TAACAGGATAAGCTCCAGAT
  • BKK17600 ([gene|24829427B4518FE67038F194B54D4AAFAC64EF19|xylA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK17600 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTGATTTCCCCCTTAAA, downstream forward: _UP4_TAACAGGATAAGCTCCAGAT

    • References

  • 7966270,1921970,8132469,2454911,1588910,22900538